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Library Information


Library Code

Associated Sample

Use

 Library Construction Library Sequencing

Replication Type

 Notes
AFI1 AFIsc1 Default ILLUMINA ILLUMINA None
AFI2 AFIsc2 Default ILLUMINA ILLUMINA None
ATR1 ATRsc1 Default ILLUMINA ILLUMINA None
CAN1 CANsc1 Default ILLUMINA ILLUMINA None
CAN2 CANsc2 Default ILLUMINA ILLUMINA None
CAN3 CANsc3 Default ILLUMINA ILLUMINA None
CCO1 CCOsc1 Secondary ILLUMINA ILLUMINA It exhibits higher-plant miRNA contamination.Replaced with CCO4. To be stored on the private side.
CCO2 CCOsc2 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by CCO5
CCO3 CCOsc3 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by CCO6
CCO4 CCOsc1 Secondary DBI DBI Tech rep Replicate of CCO1 for evaluating higher-plant miRNA contamination. Not contaminated. Replaced with CCO4_b.
CCO4_b CCOsc1 Default DBI DBI Analysis rep Same physical library and sequencing as CCO4. Raw sequencing data re-analyzed with pipeline 1.4.0. Not contaminated.
CCO5 CCOsc2 Default ILLUMINA ILLUMINA Tech rep Replaces CCO2
CCO6 CCOsc3 Default ILLUMINA ILLUMINA Tech rep Replaces CCO3
CMA1 CMAsc1 Default ILLUMINA ILLUMINA None
CMA2 CMAsc2 Default ILLUMINA ILLUMINA None
CMA3 CMAsc3 Default ILLUMINA ILLUMINA None
CMA4 CMAsc3 Secondary ILLUMINA ILLUMINA Tech rep Replicate of CMA3 to be used as a backup if necessary
CPA1 CPAsc1 Default ILLUMINA ILLUMINA None
CPA2 CPAsc2 Default ILLUMINA ILLUMINA None
CPA3 CPAsc3 Default ILLUMINA ILLUMINA None
CRE1 CREsc1 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by CRE6
CRE2 CREsc2 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by CRE7
CRE3 CREsc3 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by CRE8
CRE6 CREsc1 Default ILLUMINA ILLUMINA Tech rep Replaces CRE1
CRE7 CREsc2 Default ILLUMINA ILLUMINA Tech rep Replaces CRE2
CRE8 CREsc3 Default ILLUMINA ILLUMINA Tech rep Replaces CRE3
CRU1 CRUsc1 Default ILLUMINA ILLUMINA None
CRU2 CRUsc2 Default ILLUMINA ILLUMINA None
CRU3 CRUsc3 Default ILLUMINA ILLUMINA None
CSI1 CSIsc1 Default ILLUMINA ILLUMINA None
CSI2 CSIsc2 Default ILLUMINA ILLUMINA None
CSI3 CSIsc3 Default ILLUMINA ILLUMINA None
GAR1 GARsc1 Default ILLUMINA ILLUMINA None
GAR2 GARsc2 Default ILLUMINA ILLUMINA None
GAR3 GARsc3 Default ILLUMINA ILLUMINA None
GBI1 GBIsc1 Default ILLUMINA ILLUMINA None
GBI2 GBIsc2 Default ILLUMINA ILLUMINA None
GBI3 GBIsc3 Default ILLUMINA ILLUMINA None
HVU1 HVUsc1 Default ILLUMINA ILLUMINA None
HVU2 HVUsc2 Default ILLUMINA ILLUMINA None
HVU3 HVUsc3 Default ILLUMINA ILLUMINA None
LSA1 LSAsc1 Default ILLUMINA ILLUMINA None
LSA2 LSAsc2 Default ILLUMINA ILLUMINA None
LSA3 LSAsc3 Default ILLUMINA ILLUMINA None
MAC1 MACsc1 Default ILLUMINA ILLUMINA None
MAC2 MACsc2 Default ILLUMINA ILLUMINA None
MAC3 MACsc3 Default ILLUMINA ILLUMINA None
MGI1 MGIsc1 Default ILLUMINA ILLUMINA None
MGI2 MGIsc2 Default ILLUMINA ILLUMINA None
MGI3 MGIsc3 Default ILLUMINA ILLUMINA None
MGU1 MGUsc1 Default ILLUMINA ILLUMINA None
MGU2 MGUsc2 Default ILLUMINA ILLUMINA None
MGU3 MGUsc3 Default ILLUMINA ILLUMINA None
MQU1 MQUsc1 Default ILLUMINA ILLUMINA None
MQU2 MQUsc2 Default ILLUMINA ILLUMINA None
MQU3 MQUsc3 Default ILLUMINA ILLUMINA None
MQU4 MQUsc3 Secondary ILLUMINA ILLUMINA Tech rep Replicate of MQU3 to be used as a backup if necessary
NAD1 NADsc1 Default ILLUMINA ILLUMINA None
NAD2 NADsc2 Default ILLUMINA ILLUMINA None
NAD3 NADsc3 Default ILLUMINA ILLUMINA Tech rep Replicate of NAD3_b for eliminating serious mammalian contamination issue. To be used for public.
NAD3_b NADsc3 Secondary ILLUMINA ILLUMINA Original NAD3 library (despite the code). It exhibits prominent mammalian miRNA contamination. To be stored on the private side. Replaced with NAD3.
NTA1 NTAsc1 Default ILLUMINA ILLUMINA None
NTA2 NTAsc2 Default ILLUMINA ILLUMINA None
NTA3 NTAsc3 Default ILLUMINA ILLUMINA None
PAB1 PABsc1 Default ILLUMINA ILLUMINA None
PAB2 PABsc2 Default ILLUMINA ILLUMINA None
PAB3 PABsc3 Default ILLUMINA ILLUMINA None
PAM1 PAMsc1 Default ILLUMINA ILLUMINA None
PAM2 PAMsc2 Default ILLUMINA ILLUMINA None
PAM3 PAMsc3 Default ILLUMINA ILLUMINA None
PHY1 PHYsc1 Default ILLUMINA ILLUMINA Tech rep Replicate of PHY1_b for eliminating serious mammalian contamination issue. To be used for public.
PHY1_b PHYsc1 Secondary ILLUMINA ILLUMINA Original PHY1 library (despite the code). It exhibits prominent mammalian miRNA contamination. To be stored on the private side. Replaced with PHY1.
PHY2 PHYsc2 Secondary ILLUMINA ILLUMINA None
PHY3 PHYsc3 Default ILLUMINA ILLUMINA None
PHY4 PHYsc2 Default DBI DBI Biorep Biological replicate of PHY2 analyzed with pipeline 1.3
PTR1 PTRsc1 Default ILLUMINA ILLUMINA None
PTR2 PTRsc2 Default ILLUMINA ILLUMINA None
PTR3 PTRsc3 Default ILLUMINA ILLUMINA None
PVI1 PVIsc1 Default ILLUMINA ILLUMINA None
PVI2 PVIsc2 Default ILLUMINA ILLUMINA None
PVI3 PVIsc3 Default ILLUMINA ILLUMINA None
SBI1 SBIsc1 Default ILLUMINA ILLUMINA Tech rep Replicate of SBI1_b for eliminating serious mammalian contamination issue. To be used for public.
SBI1_b SBIsc1 Secondary ILLUMINA ILLUMINA Original SBI1 library (despite the code). It exhibits prominent mammalian miRNA contamination. To be stored on the private side. Replaced with SBI1.
SBI2 SBIsc2 Default ILLUMINA ILLUMINA None
SBI3 SBIsc3 Default ILLUMINA ILLUMINA None
SIT1 SITsc1 Default ILLUMINA ILLUMINA None
SIT2 SITsc2 Default ILLUMINA ILLUMINA None
SIT3 SITsc3 Default ILLUMINA ILLUMINA None
SLA1 SLAsc1 Default ILLUMINA ILLUMINA None
SLA2 SLAsc2 Default ILLUMINA ILLUMINA None
SLA3 SLAsc3 Default ILLUMINA ILLUMINA None
SLY1 SLYsc1 Default ILLUMINA ILLUMINA None
SLY2 SLYsc2 Default ILLUMINA ILLUMINA None
SLY3 SLYsc3 Default ILLUMINA ILLUMINA None
STU1 STUsc1 Default ILLUMINA ILLUMINA None
STU2 STUsc2 Default ILLUMINA ILLUMINA None
STU3 STUsc3 Default ILLUMINA ILLUMINA None
TAE1 TAEsc1 Default ILLUMINA ILLUMINA None
TAE2 TAEsc2 Default ILLUMINA ILLUMINA None
TAE3 TAEsc3 Default ILLUMINA ILLUMINA None
VCA1 VCAsc1 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by VCA4
VCA2 VCAsc2 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by VCA5
VCA3 VCAsc3 Secondary ILLUMINA ILLUMINA Contaminated with higher-plant miRNAs, replaced by VCA6
VCA4 VCAsc1 Default ILLUMINA ILLUMINA Tech rep Replaces VCA1
VCA5 VCAsc2 Default ILLUMINA ILLUMINA Tech rep Replaces VCA2
VCA6 VCAsc3 Default ILLUMINA ILLUMINA Tech rep Replaces VCA3
VVI1 VVIsc1 Default ILLUMINA ILLUMINA None
VVI2 VVIsc2 Default ILLUMINA ILLUMINA None
VVI3 VVIsc3 Default ILLUMINA ILLUMINA None
ZMA1 ZMAsc1 Default ILLUMINA ILLUMINA None
ZMA2 ZMAsc2 Default ILLUMINA ILLUMINA None
ZMA3 ZMAsc3 Default ILLUMINA ILLUMINA None
ZMR1 ZMRsc1 Default ILLUMINA ILLUMINA None
ZMR2 ZMRsc2 Default ILLUMINA ILLUMINA None
ZMR3 ZMRsc3 Default ILLUMINA ILLUMINA None